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| runs `gth -xmlout -minalignmentscore 0.90 -mincoverage 0.90 -seedlength 16 -species arabidopsis -cdna <marker seqs> -genomic <genomic seqs>`. Takes alignments from the XML result, and converts them to GFF3. | Same as AnSgnUnigenes000 |
Summary
Tag |
sgn_markers |
Owner |
SGN |
Input |
genomic sequences |
Output |
significant alignments to SGN Marker sequences |
Depends |
seq |
Uses GenomeThreader to align SGN marker sequences to the genome.
Input
genomic sequences ( seq vecscreened:fasta )
Processing
Same as AnSgnUnigenes000
Output
gth:xml, markers:gff3