Owner
The respective sequencing centers
Description
After uploading to GenBank, BACs must be uploaded to SGN.
Input
Filenames
<BAC name>.tar.gz (e.g. C01HBa0001A01.tar.gz)
Requirements
See SOL Project Sequencing and Bioinformatics Standards and Guidelines (Google doc)
Location
Not located in pipeline repository.
Processing
SGN unpacks, validates, and publishes the contents of each BAC submission and performs some preliminary analyses.
Output
Filenames
Not located in pipeline repository. Published files are available on the SGN FTP site at ftp://ftp.sgn.cornell.edu/tomato_genome/bacs.
Requirements
The submission tarball must be correctly formatted. A correctly formatted tarball must also have a correctly formatted GenBank record, accessible with the accession listed in the file gbacc.txt inside the submission tarball. For details of proper submission formatting, see SOL Project Sequencing and Bioinformatics Standards and Guidelines (Google doc).
Location
On the SGN FTP site.