iTAG Wiki
Welcome to the International Tomato Annotation Group (ITAG) wiki, part of the International Solanaceae Genomics (SOL) Project. ITAG is the group of people and organizations working together to produce a uniform, high-quality annotation of the tomato genome. Currently, the primary function of the ITAG is to construct and maintain a distributed pipeline for annotating tomato BAC and pseudomolecule/chromosome sequences. This wiki serves as the primary hub of documentation for the ongoing development of the distributed annotation pipeline.
For an overview of what the pipeline actually is and how it works, see PipelineGeneral.
For a list of ITAG project participants, see AboutItag.
ITAG meeting minutes are kept on the MeetingMinutes page.
To edit pages you have to be registered and your username must be on the members list for this wiki, to get your name on the members list for this wiki send an email to the site admins: Email: <bas DOT te lintelhekkert AT SPAMFREE wur DOT nl;erwin DOT datema AT SPAMFREE wur DOT nl>
Itag on IRC?? Here is a (very small) howto: ItagIrc
Transcript of the IRC meeting : ItagOnIrcMeeting1
Pipeline
Current pipeline version: Pipeline000
- Previous versions:
Archive of all pipeline versions: PipelineArchive
RecentChanges on this wiki
Training Set
Validation of gene models to be included in the training set: TrainingSet
Other Resources
SOL Bioinformatics resources at SGN
SOL Project Sequencing and Bioinformatics Standards and Guidelines (Google doc)
abstracts, posters etc
Miscellaneous
* TomatoDict (contains variables used throughout this wiki)